H&E boyanmış karaciğer dokularında histopatolojik kanser kök hücre imgelerinin sınıflandırılması

Microscopic images are an essential part of cancer diagnosis process in modern medicine. However, diagnosing tis sues under microscope is a time-consuming task for pathologists. There is also a significant variation in pathologists' decisions on tissue labeling. In this study, we developed a computer-aided diagnosis (CAD) system that classifies and grades H&E stained liver tissue images for pathologists in order to speed up the cancer diagnosis process. This system is designed for H&E stained tissues, because it is cheaper than the conventional CD13 stain. The first step is labeling the tissue images for classification purposes. CD13 stained tissue images are used to construct ground truth labels, because in H&E stained tissues cancer stem cells (CSC) cannot be observed by naked eye. Feature extraction is the next step. Since CSCs cannot be observed by naked eye in H&E stained tissues, we need to extract distinguishing texture features. For this purpose, 20 features are chosen from nine different color spaces. These features are fed into a modified version of Principal Component Analysis (PCA) algorithm, which is proposed in this thesis. This algorithm takes covariance matrices of feature matrices of images instead of pixel values of images as input. Images are compared in the eigenspace and classifies them according to the angle between them. It is experimentally shown that this algorithm can achieve 76.0% image classification accuracy in H&E stained liver tissues for a three-class classification problem. Scale invariant feature transform (SIFT), local binary patterns (LBP) and directional feature extraction algorithms are also utilized to classify and grade H&E stained liver tissues. It is observed in the experiments that these features do not provide meaningful information to grade H&E stained liver tissue images. Since our aim is to speed up the cancer diagnosis process, computationally efficient versions of proposed modified PCA algorithm are also proposed. Multiplication-free cosine-like similarity measures are employed in the modified PCA algorithm and it is shown that some versions of the multiplication-free similarity measure based modified PCA algorithm produces better classification accuracies than the standard modified PCA algorithm. One of the proposed multiplication-free similarity measures achieves 76.0% classification accuracy in our dataset containing 454 images of three classes.