Hızlandırılmış difüzyon mrg için fizik kısıtlamalı denetimsiz derin öğrenme
2025
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Advisor: Doç. Dr. Emine Ülkü Sarıtaş Çukur
Abstract (EN)
Diffusion Magnetic Resonance Imaging (dMRI) is a noninvasive technique that probes the microscopic Brownian movement of water molecules within neural tissues, providing insights into the underlying microstructural architecture. In dMRI, the displacement of spins is encoded in a domain called q-space through the use of diffusion-sensitizing gradients. Classical dMRI models, such as diffusion tensor imaging (DTI), require only a few samples in q-space, but fall short in resolving crossing or diverging fiber bundles. To address these limitations, High Angular Resolution Diffusion Imaging (HARDI) was introduced to enhance fiber characterization by densely sampling the q-space across multiple spherical shells defined by different b-values, thereby detecting several fiber orientations within a single voxel. Building on this framework, advanced multi-shell techniques such as Multi-Shell Spherical Deconvolution (MSMT-CSD) and Neurite Orientation Dispersion and Density Imaging (NODDI) have been developed, offering refined insights into complex microstructural features. Nevertheless, the requirement for densely sampling q-space renders advanced dMRI techniques extremely time-consuming and impractical for clinical use. This thesis proposes a deep unsupervised Q-space Upsampling via physics-Constrained Coordinate-based Implicit network (QUCCI) to accelerate multi-shell dMRI. QUCCI models the underlying volume as a continuous function in both spatial coordinates and q-space, enabling the sampling of q-space along arbitrary directions without the constraints of fixed sampling schemes. An encoder maps coordinates to a latent code, and an MLP predicts the signal, allowing arbitrary q-space sampling without large training datasets or vendor harmonization. Physics-based regularization stabilizes learning. Tested on 10 subjects at R = 10, 15, 22.5, and extended to joint q-space interpolation plus in-plane super-resolution for submillimeter whole-brain dMRI, QUCCI surpasses a recent deep-learning competitor, a least-squares baseline, and raw undersampled data. Slice-, subject-, and metric- level evaluations, and downstream DTI, MSMT-CSD, and NODDI maps confirm its superior fidelity. QUCCI enables accelerated dMRI with minimal information loss, advancing the clinical feasibility of advanced multi-shell methods.
Author
Dr. Atakan Topcu
Institution
How to Cite
Atakan Topcu (Master Thesis). Hızlandırılmış difüzyon mrg için fizik kısıtlamalı denetimsiz derin öğrenme, 2025, Bilkent University.
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